Plots the chromatophic profiles of the compounds found by eRah. Similarly to plotProfile, but with two sub-windows, showing the chromatophic profiles before and after alignment.
Usage
plotAlign(Experiment,AlignId, per.class = T, xlim = NULL)
# S4 method for MetaboSet
plotAlign(Experiment, AlignId, per.class = T, xlim = NULL)Arguments
- Experiment
A 'MetaboSet' S4 object containing the experiment after being deconolved, aligned and (optionally) identified.
- AlignId
the Id identificator for the compound to be shown.
- per.class
logical. if TRUE the profiles are shown one color per class, if FALSE one color per sample.
- xlim
x axsis (retention time) limits (see
plot.default).